Publications

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338 entries « 1 of 7 »

2021

Muller, M F; Roche, K R; Dralle, D N

Catchment processes can amplify the effect of increasing rainfall variability Journal Article

Environmental Research Letters, 16 (8), 2021.

Abstract | BibTeX | Tags: climate change, ERCZO, rainfall, Stream Flow, water resources

Dralle, D N; Hahm, W J; Chadwick, K D; McCormick, E; Rempe, D M

Technical note: Accounting for snow in the estimation of root zone water storage capacity from precipitation and evapotranspiration fluxes Journal Article

Hydrology and Earth System Sciences, 25 (5), pp. 2861–2867, 2021.

Abstract | Links | BibTeX | Tags: ERCZO, evapotranspiration, hydrologic modeling, root zone, snow melt, water storage

Hood, James M; Collis, Lyndsie M; Schade, John D; Stark, Rebecca A; Finlay, Jacques C

Longitudinal patterns and linkages in benthic fine particulate organic matter composition, respiration, and nutrient uptake Journal Article

Limnology and Oceanography, 2021.

Abstract | Links | BibTeX | Tags: benthic, fine particulate organic matter, microbial biomass, Nutrient Cycling, Stream Ecology

Power, Mary E

Synthetic threads through the web of life Journal Article

PNAS, 2021.

Abstract | Links | BibTeX | Tags: CRISPR, ecological impacts, gene drives, interaction strength, scale linkages

Bilir, Eren T; Fung, Inez; Dawson, Todd E

Slope-Aspect Induced Climate Differences Influence How Water Is Exchanged Between the Land and Atmosphere Journal Article

JGR Biogeosciences, 126 (5), 2021.

Abstract | Links | BibTeX | Tags: MCMC, plant acclimation, sap velocity, topographic effect, transpiration drivers, transpiration modeling

Hungate, Bruce A; Marks, Jane C; Power, Mary E; Schwartz, Egbert; van Groenigen, Kees Jan; Blazewicz, Steven J; Chuckran, Peter; Dijkstra, Paul; Finley, Brianna K; Firestone, Mary K; Foley, Megan; Greenlon, Alex; Hayer, Michaela; Hofmockel, Kirsten S; Koch, Benjamin J; Mack, Michelle C; Mau, Rebecca L; Miller, Samantha N; Morrissey, Ember M; Propster, Jeffrey R; Purcell, Alicia M; Sieradzki, Ella; Starr, Evan P; Stone, Bram W G; Terrer, César; Pett-Ridge, Jennifer

The Functional Significance of Bacterial Predators Journal Article

mBio, 12 (e00466-21), 2021.

Abstract | Links | BibTeX | Tags: 18O-H2O, Bdellovibrio, food webs, predator, qSIP, stable isotope probing, top-down control, trophic interactions

Pedrazas, Michelle A; Hahm, Jesse W; Huang, Mong-Han; Dralle, David; Nelson, Mariel D; Breunig, Rachel E; Fauria, Kristen E; Bryk, Alexander B; Dietrich, William E; Rempe, Daniella M

The Relationship Between Topography, Bedrock Weathering, and Water Storage Across a Sequence of Ridges and Valleys Journal Article

JGR Earth Surface, 126 (4), 2021.

Abstract | Links | BibTeX | Tags: bedrock weathering, Critical Zone, hillslope, unsaturated zone, water storage, Weathering

Bouma-Gregson, Keith; Power, Mary E; Furey, Paula C; Huckins, Casey J; Vadeboncoeur, Yvonne

Taxon-specific photosynthetic responses of attached algal assemblages to experimental translocation between river habitats Journal Article

Freshwater Science, 40 (1), 2021.

Abstract | Links | BibTeX | Tags: algae, benthic, Cladophora, cyanobacteria, electron transport rate, flow, Microcoleus, microhabitat, PAM, photosynthesis, temperature

Rossi, Gabriel J; Power, Mary E; Pneh, Shelley; Neuswanger, Jason R; Caldwell, Timothy J

Foraging modes and movements of Oncorhynchus mykiss as flow and invertebrate drift recede in a California stream Journal Article

Canadian Journal of Fisheries and Aquatic Sciences, 2021.

Abstract | Links | BibTeX | Tags: bioenergetics, ERCZO, foraging behavior, Mediterranean streams, Oncorhynchus mykiss, salmonids, stream hydraulics, video, videogrammetry

McCormick, E; Dralle, D N; Hahm, W J; Tune, A K; Schmidt, L M; Chadwick, K D; Rempe, D M

Evidence for widespread woody plant use of water stored in bedrock Journal Article Forthcoming

Nature, Forthcoming.

Abstract | Links | BibTeX | Tags: bedrock water, ERCZO, root zone, transpiration, woody plants

2020

Schmidt, Logan; Rempe, Daniella M

Quantifying Dynamic Water Storage in Unsaturated Bedrock with Borehole Nuclear Magnetic Resonance Journal Article

Geophysical Research Letters, 47 (22), pp. e2020GL089600, 2020.

Abstract | Links | BibTeX | Tags: Critical Zone, ERCZO, hydrogeophysics, neutron moderation nuclear magnetic resonance, vadose zone, water storage

Wlostowski, Adam N; Molotch, Noah; Anderson, Suzanne P; Brantley, Susan L; Chorover, Jon; Dralle, David; Kumar, Praveen; Li, Li; Lohse, Kathleen A; Mallard, John M; McIntosh, Jennifer C; Murphy, Sheila F; Parrish, Eric; Safeeq, Mohammad; Seyfried, Mark; Shi, Yuning; Harman, Ciaran

Signatures of Hydrologic Function Across the Critical Zone Observatory Network Journal Article

Water Resources Research, 57 (3), 2020.

Abstract | Links | BibTeX | Tags: catchment sensitivity, critical zone structure, ERCZO, meta-analysis, water balance

Ishikawa, Naoto F; Finlay, Jacques C; Uno, Hiromi; Ogawa, Nanako O; Ohkouchi, Naohiko; Tayasu, Ichiro; Power, Mary E

Combined use of radiocarbon and stable carbon isotopes for the source mixing model in a stream food web Journal Article

Limnology and Oceanography, 65 (11), pp. 2688-2696, 2020.

Abstract | Links | BibTeX | Tags: food web, freshwater ecosystem, stable isotopes, stream invertebrates

Sharrar, A M; Crits-Christoph, A; Méheust, R; Diamond, S; Starr, E P; Banfield, J F

Bacterial secondary metabolite biosynthetic potential in soil varies with phylum, depth, and vegetation type. Journal Article

mBio, 11 , pp. e00416-20, 2020.

Abstract | Links | BibTeX | Tags: ERCZO, metagenomics, secondary metabolism, soil microbiology

Rossi, Gabriel J

Food, Phenology, and Flow—How Prey Phenology and Streamflow Dynamics Affect the Behavior, Ecology, and Recovery of Pacific Salmon PhD Thesis

2020.

BibTeX | Tags: behavior, ERCZO, food webs, mediterranean stream, Oncorhynchus mykiss, phenology

Uno, Hiromi; Pneh, Shelley

Effect of source habitat spatial heterogeneity and species diversity on the temporal stability of aquatic‐to‐terrestrial subsidy by emerging aquatic insects Journal Article

Ecological Research, 35 (3), pp. 474-481, 2020.

Abstract | Links | BibTeX | Tags: diversity, ecological function, ERCZO, predator-prey dynamics, Riparian, STREAM

Wang, Terrance; Kelson, Suzanne J; Greer, George; Thompson, Sally E; Carlson., Stephanie M

Tributary confluences are dynamic thermal refuges for a juvenile salmonid in a warming river network Journal Article

River Research and Applications, 2020.

Abstract | Links | BibTeX | Tags: climate change, Eel river, ERCZO, microhabitat, Oncorhynchus mykiss, stream temperatures, thermal refuges, thermal tolerance

Kelson, Suzanne J; Power, Mary E; Finlay, Jacques C; Carlson, Stephanie M

Partial migration alters population ecology and food chain length: evidence from a salmonid fish Journal Article

Ecosphere, 11 (2), pp. e03044, 2020.

Abstract | Links | BibTeX | Tags: eco-evolutionary dynamics, ERCZO, extended phenotype, food chain length, intraspecific variation, life history, O. mykiss, Oncorhynchus mykiss, partial migration, population ecology, size structure, steelhead/rainbow trout

Al-Shayeb, Basem; Sachdeva, Rohan; Chen, Lin-Xing; Ward, Fred; Munk, Patrick; Devoto, Audra; Castelle, Cindy J; Olm, Matthew R; Bouma-Gregson, Keith; Amano, Yuki; He, Christine; Méheust, Raphaël; Brooks, Brandon; Thomas, Alex; Lavy, Adi; Matheus-Carnevali, Paula; Sun, Christine; Goltsman, Daniela S A; Borton, Mikayla A; Sharrar, Allison; Jaffe, Alexander L; Nelson, Tara C; Kantor, Rose; Keren, Ray; Lane, Katherine R; Farag, Ibrahim F; Lei, Shufei; Finstad, Kari; Amundson, Ronald; Anantharaman, Karthik; Zhou, Jinglie; Probst, Alexander J; Power, Mary E; Tringe, Susannah G; Li, Wen-Jun; Wrighton, Kelly; Harrison, Sue; Morowitz, Michael; Relman, David A; Doudna, Jennifer A; Lehours, Anne-Catherine; Warren, Lesley; Cate, Jamie H D; Santini, Joanne M; Banfield, Jillian F

Clades of huge phages from across Earth’s ecosystems Journal Article

Nature, 578 , pp. 425-431, 2020.

Abstract | Links | BibTeX | Tags: bacteriophage, ERCZO, metagenomes, metagenomic sequencing

Kelson, Suzanne J; Miller, Michael R; Thompson, Tasha Q; O'Rourke, Sean M; Carlson, Stephanie M

Temporal dynamics of migration‐linked genetic variation are driven by streamflows and riverscape permeability Journal Article

Molecular Ecology, 29 (5), pp. 870-885, 2020.

Abstract | Links | BibTeX | Tags: ecology, ERCZO, genetic variation, landscape genetics, life history, O. mykiss, Oncorhynchus mykiss, partial barrier, partial migration, river networks

Uno, Hiromi; Stillman, Jonathon H

Lifetime eurythermy by seasonally matched thermal performance of developmental stages in an annual aquatic insect Journal Article

Oecologia, 192 (3), pp. 647-656, 2020.

Abstract | Links | BibTeX | Tags: Aquatic insect, life cycle, season, STREAM, temperature

Dawson, T E; Hahm, W J; Crutchfield-Peters, K

Digging deeper: what the critical zone perspective adds to the study of plant ecophysiology Journal Article

New Phytologist, 226 (3), pp. 666-671, 2020.

Abstract | Links | BibTeX | Tags: Critical Zone, ERCZO, nutrients, plant ecophysiology, soil, water, weathered bedrock

2019

Diamond, Spencer; Andeer, Peter F; Li, Zhou; Crits-Christoph, Alexander; Burstein, David; Anantharaman, Karthik; Lane, Katherine R; Thomas, Brian C; Pan, Chongle; Northen, Trent R; Banfield, Jillian F

Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Journal Article

Nature Microbiology, 4 , pp. 1356-1367, 2019.

Abstract | Links | BibTeX | Tags: ERCZO, metagenomics, soil microbes

Kelson, Suzanne J; Carlson, Stephanie M

Do precipitation extremes drive growth and migration timing of a Pacific salmonid fish in Mediterranean‐climate streams? Journal Article

Ecosphere, 10 (3), pp. e02618, 2019.

Abstract | Links | BibTeX | Tags: Drought, ERCZO, growth, headwaters, migration, Oncorhynchus mykiss, salmonids, stream flows

Bouma-Gregson, Keith; Olm, Matthew R; Probst, Alexander J; Anantharaman, Karthik; Power, Mary E; Banfield, Jillian F

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network Journal Article

The ISME Journal, 13 , pp. 1618–1634, 2019.

Abstract | Links | BibTeX | Tags: algae, cyanobacteria, ERCZO

Kelson, Suzanne J; Miller, Michael R; Thompson, Tasha Q; O'Rourke, Sean M; Carlson, Stephanie M

Do genomics and sex predict migration in a partially migratory salmonid fish, Oncorhynchus mykiss? Journal Article

Canadian Journal of Fisheries and Aquatic Sciences, 76 (11), pp. 2080-2088, 2019.

Abstract | Links | BibTeX | Tags: ERCZO, genetic variation, O. mykiss, partial migration

Gaynor, Kaitlyn M; Brown, Joel S; Middleton, Arthur D; Power, Mary E; Brashares, Justin S

Landscapes of Fear: Spatial Patterns of Risk Perception and Response. Journal Article

Trends in Ecology & Evolution , 34 (4), pp. 355-368, 2019.

Abstract | Links | BibTeX | Tags: anti-predator defenses, predator–prey interaction, risk effects

2018

Crits-Christoph, Alexander; Diamond, Spencer; Butterfield, Cristina N; Thomas, Brian C; Banfield, Jillian F

Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis Journal Article

Nature, 558 , pp. 440-444, 2018.

Abstract | Links | BibTeX | Tags: metagenomic sequencing, soil microbes

Bouma-Gregson, Keith; Kudela, Raphael M; Power, Mary

Widespread anatoxin-a detection in benthic cyanobacterial mats throughout a river network Journal Article

PLoS One, 13 (5), 2018.

Abstract | Links | BibTeX | Tags: algae, biodiversity, ERCZO

Rempe, Daniella; Dietrich, William

Direct observations of rock moisture, a hidden component of the hydrologic cycle Journal Article

Proceedings of the National Academy of Science of the United States of America, 115 (11), pp. 2664-2669, 2018.

Abstract | Links | BibTeX | Tags: Critical Zone, deep vadose zone, ERCZO, evapotranspiration, rock moisture, water budget

Power, Mary; Estes, James; Kareiva, Peter; Simon Levin, ; Lubchenco, Jane; Palumbi, Stephen

Biographical Memoire: Robert Paine Miscellaneous

2018.

Abstract | Links | BibTeX | Tags: keystone species, memoire, patch dynamics, trophic cascades

2017

Bouma-Gregson, Keith

The Ecology of Benthic Toxigenic Anabaena and Phormidium (Cyanobacteria) in the Eel River, California PhD Thesis

University of California, Berkeley, 2017, ISBN: 978-0-355-94920-9.

Abstract | BibTeX | Tags: Anabaena, Anatoxin-a, Biological sciences, cyanobacteria, Cyanotoxin, ERCZO, metagenomics, Phormidium

Vadeboncoeur, Yvonne; Power, Mary

Attached Algae: The Cryptic Base of Inverted Trophic Pyramids in Freshwaters Journal Article

Annual Review of Ecology, Evolution, and Systematics, 48 (1), pp. 255-279, 2017.

Abstract | Links | BibTeX | Tags: Cladophora, cyanobacteria, diatoms, grazers, lakes, microphytobenthos, periphyton, primary consumer, primary producer, rivers

Sculley, John; Lowe, Rex L; Nittrouer, Charles; Drexler, Tina; Power, Mary

Eighty years of food-web response to interannual variation in discharge recorded in river diatom frustules from an ocean sediment core Journal Article

Proceedings of the National Academy of Science of the United States of America, 114 (38), pp. 10155–10159, 2017.

Abstract | Links | BibTeX | Tags: diatom frustule, ecological upscaling, food-web controls, paleoproxy, river discharge, variation

Bouma-Gregson, Keith; Power, Mary; Bormans, Myriam

Rise and fall of toxic benthic freshwater cyanobacteria (Anabaena spp.) in the Eel river: Buoyancy and dispersal Journal Article

Harmful Algae, 66 (1), pp. 79-87, 2017.

Abstract | Links | BibTeX | Tags: Benthic cyanobacteria Anabaena Buoyancy Harmful algal bloom Anatoxin-a Dispersal, ERCZO

Grant, Gordon E; Dietrich, William E

The frontier beneath our feet Journal Article

Water Resources Research, 53 (4), pp. 2605-2609, 2017.

Abstract | Links | BibTeX | Tags: Critical Zone, environmental problems, ERCZO, field studies, groundwater, landscape development, water

Schaaf, Cody J; Kelson, Suzanne J; Nusslé, Sébastien C; Carlson, Stephanie M

Black spot infection in juvenile steelhead trout increases with stream temperature in northern California Journal Article

Environmental Biology of Fishes, 100 (6), pp. 733-744, 2017.

Abstract | Links | BibTeX | Tags: black spot disease, ecology, ERCZO, parasitism, steelhead trout, water temperature

Alessandro Catenazzi, Sarah Kupferberg J

Variation in thermal niche of a declining river-breeding frog:From counter-gradient responses to population distributionpatterns Journal Article

Freshwater Biology, 62 (7), pp. 1255-1265, 2017.

Abstract | Links | BibTeX | Tags: climate sensitivity, common-garden experiment, declining amphibians, hypolimnetic releases, Rana boylii

Kim, Hyojin; Dietrich, William E; Thurnhoffer, Benjamin M; Bishop, Jim K B; Fung, Inez Y

Controls on solute concentration‐discharge relationships revealed by simultaneous hydrochemistry observations of hillslope runoff and stream flow: The importance of critical zone structure Journal Article

Water Resources Research, 53 (2), pp. 1424-1443, 2017.

Abstract | Links | BibTeX | Tags: concentration-discharge relationships, critical zone structure, ERCZO, simultaneous observations of ground water and stream water

Brett, Michael T; Bunn, Stuart E; Chandra, Sudeep; Galloway, Aaron W E; Guo, Fen; Kainz, Martin J; Kankaala, Paula; Lau, Danny C P; Moulton, Timothy P; Power, Mary E; Rasmussen, Joseph B; Taipale, Sami J; Thorp, James H; Wehr, John D

How important are terrestrial organic carbon inputs for secondary production in freshwater ecosystems? Journal Article

Freshwater Biology, 62 (5), pp. 833-853, 2017.

Abstract | Links | BibTeX | Tags: allochthonous, autochthonous, biochemical composition, freshwater, resource utilisation

2016

Butterfield, Cristina N; Li, Zhou; Andeer, Peter F; Spaulding, Susan; Thomas, Brian C; Singh, Andrea; Hettich, Robert L; Suttle, Kenwyn B; Probst, Alexander J; Tringe, Susannah G; Northen, Trent; Pan, Chongle; Banfield, Jillian F

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. Journal Article

PeerJ, 4 , pp. e2687, 2016.

Abstract | Links | BibTeX | Tags: metagenomics, northern California, soil microbes

Riebe, Clifford S; Hahm, Jesse W; Brantley, Susan L

Controls on deep critical zone architecture: a historical review and four testable hypotheses Journal Article

Earth Surface Processes and Landforms, 42 (1), pp. 128-156, 2016.

Abstract | Links | BibTeX | Tags: regolith production; near-surface geophysics; weathering; fractures

Estes, James; Dayton, Paul; Kareiva, Peter; Levin, Simon; Lubchenco, Jane; Menge, Bruce; Palumbi, Stephen; Mary, ; Power, ; Terborgh, John

A keystone ecologist: Robert Treat Paine, 1933–2016 Journal Article

Ecology, 97 (11), pp. 2905-2909, 2016.

Abstract | Links | BibTeX | Tags: intermediate disturbance, keystone species, mentor, patch dynamics, tribute to life, trophic cascade, zonation

Lee, Jun-Hak; Biging, Gregory; Fisher, Joshua

An Individual Tree-Based Automated Registration of Aerial Images to Lidar Data in a Forested Area Journal Article

Photogrammetric Engineering & Remote Sensing, 82 (9), pp. 699-701, 2016.

Abstract | Links | BibTeX | Tags: aerial images, LiDAR, tree tops

Lind, Amy; Welsh, Hartwell; Wheeler, Clara

Foothill yellow-legged frog (Rana boylii) oviposition site choice at multiple spatial scales Journal Article

Journal of Herpetology, 50 (2), pp. 263-270, 2016.

Abstract | Links | BibTeX | Tags: Rana boylii

Uno, Hiromi

Spatial and temporal linkage of stream-riparian food webs by seasonal migration of mayfly Ephemerella maculata PhD Thesis

University of California, Berkeley, 2016, ISBN: 978-1-369-05549-8.

Abstract | BibTeX | Tags: Aquatic insect, Aquatic-terrestrial linkage, Biological sciences, ERCZO, food web, Spatial heterogeneity, subsidy, Temporal heterogeneity

Power, Mary E; Kupferberg, Sarah J; Cooper, Scott D; Deas, Michael L

Ecosystems of California, Rivers Book Chapter

Mooney, Harold; Zavaleta, Erika (Ed.): Chapter 33, pp. 713-752, University of California Press, 2016, ISBN: 0520278801.

Abstract | Links | BibTeX | Tags: California rivers, ecosystem

Afkhami, Michelle E; Strauss, Sharon Y

Native fungal endophytes suppress an exotic dominant and increase plant diversity over small and large spatial scales Journal Article

Ecology, 97 (5), pp. 1159–1169, 2016.

Abstract | Links | BibTeX | Tags: biodiversity, Bromus laevipes, Epichloë, evenness, fungal endophyte, grass, hidden players, invasive species, keystone species, mutualism, richness, symbiosis

2015

Dralle, David; Karst, Nathaniel; Thompson, Sally E

a, b careful: The challenge of scale invariance for comparative analyses in power law models of the streamflow recession Journal Article

Geophysical Research Letters, 42 (21), 2015.

Abstract | Links | BibTeX | Tags: Power Law, Stream Flow

Uno, Hiromi; Power, Mary E

Mainstem-tributary linkages by mayfly migration help sustain salmonids in a warming river network Journal Article

Ecology Letters, 18 (10), pp. 1012-1020, 2015.

Abstract | Links | BibTeX | Tags: salmonids, warming

338 entries « 1 of 7 »