Publications

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323 entries « 1 of 7 »

2020

Rossi, Gabriel J

Food, Phenology, and Flow—How Prey Phenology and Streamflow Dynamics Affect the Behavior, Ecology, and Recovery of Pacific Salmon PhD Thesis

2020.

BibTeX | Tags: behavior, food webs, mediterranean stream, Oncorhynchus mykiss, phenology

Uno, Hiromi; Pneh, Shelley

Effect of source habitat spatial heterogeneity and species diversity on the temporal stability of aquatic‐to‐terrestrial subsidy by emerging aquatic insects Journal Article

Ecological Research, 35 (3), pp. 474-481, 2020.

Abstract | Links | BibTeX | Tags: diversity, ecological function, predator-prey dynamics, Riparian, STREAM

Wang, Terrance; Kelson, Suzanne J; Greer, George; Thompson, Sally E; Carlson., Stephanie M

Tributary confluences are dynamic thermal refuges for a juvenile salmonid in a warming river network Journal Article

River Research and Applications, 2020.

Abstract | Links | BibTeX | Tags: climate change, Eel river, microhabitat, Oncorhynchus mykiss, stream temperatures, thermal refuges, thermal tolerance

Kelson, Suzanne J; Power, Mary E; Finlay, Jacques C; Carlson, Stephanie M

Partial migration alters population ecology and food chain length: evidence from a salmonid fish Journal Article

Ecosphere, 11 (2), pp. e03044, 2020.

Abstract | Links | BibTeX | Tags: eco-evolutionary dynamics, extended phenotype, food chain length, intraspecific variation, life history, O. mykiss, Oncorhynchus mykiss, partial migration, population ecology, size structure, steelhead/rainbow trout

Al-Shayeb, Basem; Sachdeva, Rohan; Chen, Lin-Xing; Ward, Fred; Munk, Patrick; Devoto, Audra; Castelle, Cindy J; Olm, Matthew R; Bouma-Gregson, Keith; Amano, Yuki; He, Christine; Méheust, Raphaël; Brooks, Brandon; Thomas, Alex; Lavy, Adi; Matheus-Carnevali, Paula; Sun, Christine; Goltsman, Daniela S A; Borton, Mikayla A; Sharrar, Allison; Jaffe, Alexander L; Nelson, Tara C; Kantor, Rose; Keren, Ray; Lane, Katherine R; Farag, Ibrahim F; Lei, Shufei; Finstad, Kari; Amundson, Ronald; Anantharaman, Karthik; Zhou, Jinglie; Probst, Alexander J; Power, Mary E; Tringe, Susannah G; Li, Wen-Jun; Wrighton, Kelly; Harrison, Sue; Morowitz, Michael; Relman, David A; Doudna, Jennifer A; Lehours, Anne-Catherine; Warren, Lesley; Cate, Jamie H D; Santini, Joanne M; Banfield, Jillian F

Clades of huge phages from across Earth’s ecosystems Journal Article

Nature, 578 , pp. 425-431, 2020.

Abstract | Links | BibTeX | Tags: bacteriophage, metagenomes, metagenomic sequencing

Kelson, Suzanne J; Miller, Michael R; Thompson, Tasha Q; O'Rourke, Sean M; Carlson, Stephanie M

Temporal dynamics of migration‐linked genetic variation are driven by streamflows and riverscape permeability Journal Article

Molecular Ecology, 29 (5), pp. 870-885, 2020.

Abstract | Links | BibTeX | Tags: ecology, genetic variation, landscape genetics, life history, O. mykiss, Oncorhynchus mykiss, partial barrier, partial migration, river networks

Uno, Hiromi; Stillman, Jonathon H

Lifetime eurythermy by seasonally matched thermal performance of developmental stages in an annual aquatic insect Journal Article

Oecologia, 192 (3), pp. 647-656, 2020.

Abstract | Links | BibTeX | Tags: Aquatic insect, life cycle, season, STREAM, temperature

2019

Diamond, Spencer; Andeer, Peter F; Li, Zhou; Crits-Christoph, Alexander; Burstein, David; Anantharaman, Karthik; Lane, Katherine R; Thomas, Brian C; Pan, Chongle; Northen, Trent R; Banfield, Jillian F

Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Journal Article

Nature Microbiology, 4 , pp. 1356-1367, 2019.

Abstract | Links | BibTeX | Tags: metagenomics, soil microbes

Kelson, Suzanne J; Carlson, Stephanie M

Do precipitation extremes drive growth and migration timing of a Pacific salmonid fish in Mediterranean‐climate streams? Journal Article

Ecosphere, 10 (3), pp. e02618, 2019.

Abstract | Links | BibTeX | Tags: Drought, growth, headwaters, migration, Oncorhynchus mykiss, salmonids, stream flows

Bouma-Gregson, Keith; Olm, Matthew R; Probst, Alexander J; Anantharaman, Karthik; Power, Mary E; Banfield, Jillian F

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network Journal Article

The ISME Journal, 13 , pp. 1618–1634, 2019.

Abstract | Links | BibTeX | Tags: algae, cyanobacteria

Kelson, Suzanne J; Miller, Michael R; Thompson, Tasha Q; O'Rourke, Sean M; Carlson, Stephanie M

Do genomics and sex predict migration in a partially migratory salmonid fish, Oncorhynchus mykiss? Journal Article

Canadian Journal of Fisheries and Aquatic Sciences, 76 (11), pp. 2080-2088, 2019.

Abstract | Links | BibTeX | Tags: genetic variation, O. mykiss, partial migration

Gaynor, Kaitlyn M; Brown, Joel S; Middleton, Arthur D; Power, Mary E; Brashares, Justin S

Landscapes of Fear: Spatial Patterns of Risk Perception and Response. Journal Article

Trends in Ecology & Evolution , 34 (4), pp. 355-368, 2019.

Abstract | Links | BibTeX | Tags: anti-predator defenses, predator–prey interaction, risk effects

2018

Crits-Christoph, Alexander; Diamond, Spencer; Butterfield, Cristina N; Thomas, Brian C; Banfield, Jillian F

Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis Journal Article

Nature, 558 , pp. 440-444, 2018.

Abstract | Links | BibTeX | Tags: metagenomic sequencing, soil microbes

Bouma-Gregson, Keith; Kudela, Raphael M; Power, Mary

Widespread anatoxin-a detection in benthic cyanobacterial mats throughout a river network Journal Article

PLoS One, 13 (5), 2018.

Abstract | Links | BibTeX | Tags: algae, biodiversity

Rempe, Daniella; Dietrich, William

Direct observations of rock moisture, a hidden component of the hydrologic cycle Journal Article

Proceedings of the National Academy of Science of the United States of America, 115 (11), pp. 2664-2669, 2018.

Abstract | Links | BibTeX | Tags: Critical Zone, deep vadose zone, evapotranspiration, rock moisture, water budget

Power, Mary; Estes, James; Kareiva, Peter; Simon Levin, ; Lubchenco, Jane; Palumbi, Stephen

Biographical Memoire: Robert Paine Miscellaneous

2018.

Abstract | Links | BibTeX | Tags: keystone species, memoire, patch dynamics, trophic cascades

2017

Bouma-Gregson, Keith

The Ecology of Benthic Toxigenic Anabaena and Phormidium (Cyanobacteria) in the Eel River, California PhD Thesis

University of California, Berkeley, 2017, ISBN: 978-0-355-94920-9.

Abstract | BibTeX | Tags: Anabaena, Anatoxin-a, Biological sciences, cyanobacteria, Cyanotoxin, metagenomics, Phormidium

Vadeboncoeur, Yvonne; Power, Mary

Attached Algae: The Cryptic Base of Inverted Trophic Pyramids in Freshwaters Journal Article

Annual Review of Ecology, Evolution, and Systematics, 48 (1), pp. 255-279, 2017.

Abstract | Links | BibTeX | Tags: Cladophora, cyanobacteria, diatoms, grazers, lakes, microphytobenthos, periphyton, primary consumer, primary producer, rivers

Sculley, John; Lowe, Rex L; Nittrouer, Charles; Drexler, Tina; Power, Mary

Eighty years of food-web response to interannual variation in discharge recorded in river diatom frustules from an ocean sediment core Journal Article

Proceedings of the National Academy of Science of the United States of America, 114 (38), pp. 10155–10159, 2017.

Abstract | Links | BibTeX | Tags: diatom frustule, ecological upscaling, food-web controls, paleoproxy, river discharge, variation

Bouma-Gregson, Keith; Power, Mary; Bormans, Myriam

Rise and fall of toxic benthic freshwater cyanobacteria (Anabaena spp.) in the Eel river: Buoyancy and dispersal Journal Article

Harmful Algae, 66 (1), pp. 79-87, 2017.

Abstract | Links | BibTeX | Tags: Benthic cyanobacteria Anabaena Buoyancy Harmful algal bloom Anatoxin-a Dispersal

Grant, Gordon E; Dietrich, William E

The frontier beneath our feet Journal Article

Water Resources Research, 53 (4), pp. 2605-2609, 2017.

Abstract | Links | BibTeX | Tags: Critical Zone, environmental problems, field studies, groundwater, landscape development, water

Schaaf, Cody J; Kelson, Suzanne J; Nusslé, Sébastien C; Carlson, Stephanie M

Black spot infection in juvenile steelhead trout increases with stream temperature in northern California Journal Article

Environmental Biology of Fishes, 100 (6), pp. 733-744, 2017.

Abstract | Links | BibTeX | Tags: black spot disease, ecology, parasitism, steelhead trout, water temperature

Alessandro Catenazzi, Sarah Kupferberg J

Variation in thermal niche of a declining river-breeding frog:From counter-gradient responses to population distributionpatterns Journal Article

Freshwater Biology, 62 (7), pp. 1255-1265, 2017.

Abstract | Links | BibTeX | Tags: climate sensitivity, common-garden experiment, declining amphibians, hypolimnetic releases, Rana boylii

Kim, Hyojin; Dietrich, William E; Thurnhoffer, Benjamin M; Bishop, Jim K B; Fung, Inez Y

Controls on solute concentration‐discharge relationships revealed by simultaneous hydrochemistry observations of hillslope runoff and stream flow: The importance of critical zone structure Journal Article

Water Resources Research, 53 (2), pp. 1424-1443, 2017.

Abstract | Links | BibTeX | Tags: concentration-discharge relationships, critical zone structure, simultaneous observations of ground water and stream water

Brett, Michael T; Bunn, Stuart E; Chandra, Sudeep; Galloway, Aaron W E; Guo, Fen; Kainz, Martin J; Kankaala, Paula; Lau, Danny C P; Moulton, Timothy P; Power, Mary E; Rasmussen, Joseph B; Taipale, Sami J; Thorp, James H; Wehr, John D

How important are terrestrial organic carbon inputs for secondary production in freshwater ecosystems? Journal Article

Freshwater Biology, 62 (5), pp. 833-853, 2017.

Abstract | Links | BibTeX | Tags: allochthonous, autochthonous, biochemical composition, freshwater, resource utilisation

2016

Butterfield, Cristina N; Li, Zhou; Andeer, Peter F; Spaulding, Susan; Thomas, Brian C; Singh, Andrea; Hettich, Robert L; Suttle, Kenwyn B; Probst, Alexander J; Tringe, Susannah G; Northen, Trent; Pan, Chongle; Banfield, Jillian F

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. Journal Article

PeerJ, 4 , pp. e2687, 2016.

Abstract | Links | BibTeX | Tags: metagenomics, northern California, soil microbes

Riebe, Clifford S; Hahm, Jesse W; Brantley, Susan L

Controls on deep critical zone architecture: a historical review and four testable hypotheses Journal Article

Earth Surface Processes and Landforms, 42 (1), pp. 128-156, 2016.

Abstract | Links | BibTeX | Tags: regolith production; near-surface geophysics; weathering; fractures

Estes, James; Dayton, Paul; Kareiva, Peter; Levin, Simon; Lubchenco, Jane; Menge, Bruce; Palumbi, Stephen; Mary, ; Power, ; Terborgh, John

A keystone ecologist: Robert Treat Paine, 1933–2016 Journal Article

Ecology, 97 (11), pp. 2905-2909, 2016.

Abstract | Links | BibTeX | Tags: intermediate disturbance, keystone species, mentor, patch dynamics, tribute to life, trophic cascade, zonation

Lee, Jun-Hak; Biging, Gregory; Fisher, Joshua

An Individual Tree-Based Automated Registration of Aerial Images to Lidar Data in a Forested Area Journal Article

Photogrammetric Engineering & Remote Sensing, 82 (9), pp. 699-701, 2016.

Abstract | Links | BibTeX | Tags: aerial images, LiDAR, tree tops

Lind, Amy; Welsh, Hartwell; Wheeler, Clara

Foothill yellow-legged frog (Rana boylii) oviposition site choice at multiple spatial scales Journal Article

Journal of Herpetology, 50 (2), pp. 263-270, 2016.

Abstract | Links | BibTeX | Tags: Rana boylii

Uno, Hiromi

Spatial and temporal linkage of stream-riparian food webs by seasonal migration of mayfly Ephemerella maculata PhD Thesis

University of California, Berkeley, 2016, ISBN: 978-1-369-05549-8.

Abstract | BibTeX | Tags: Aquatic insect, Aquatic-terrestrial linkage, Biological sciences, food web, Spatial heterogeneity, subsidy, Temporal heterogeneity

Power, Mary E; Kupferberg, Sarah J; Cooper, Scott D; Deas, Michael L

Ecosystems of California, Rivers Book Chapter

Mooney, Harold; Zavaleta, Erika (Ed.): Chapter 33, pp. 713-752, University of California Press, 2016, ISBN: 0520278801.

Abstract | Links | BibTeX | Tags: California rivers, ecosystem

Afkhami, Michelle E; Strauss, Sharon Y

Native fungal endophytes suppress an exotic dominant and increase plant diversity over small and large spatial scales Journal Article

Ecology, 97 (5), pp. 1159–1169, 2016.

Abstract | Links | BibTeX | Tags: biodiversity, Bromus laevipes, Epichloë, evenness, fungal endophyte, grass, hidden players, invasive species, keystone species, mutualism, richness, symbiosis

2015

Dralle, David; Karst, Nathaniel; Thompson, Sally E

a, b careful: The challenge of scale invariance for comparative analyses in power law models of the streamflow recession Journal Article

Geophysical Research Letters, 42 (21), 2015.

Abstract | Links | BibTeX | Tags: Power Law, Stream Flow

Uno, Hiromi; Power, Mary E

Mainstem-tributary linkages by mayfly migration help sustain salmonids in a warming river network Journal Article

Ecology Letters, 18 (10), pp. 1012-1020, 2015.

Abstract | Links | BibTeX | Tags: salmonids, warming

Carah, Jennifer K; Howard, Jeanette K; Thompson, Sally E; Gianotti, Anne Short G; Bauer, Scott D; Carlson, Stephanie M; Dralle, David N; Gabriel, Mourad W; Hulette, Lisa L; Johnson, Brian J; Knight, Curtis A; Kupferberg, Sarah J; Martin, Stefanie L; Naylor, Rosamond L; Power, Mary E

High Time for Conservation: Adding the Environment to the Debate on Marijuana Liberalization Journal Article

BioScience, 65 (8), pp. 822-829, 2015.

Abstract | Links | BibTeX | Tags: Environment, Marijuana

F. Stuart Chapin, III ; Pickett, Steward T A; Power, Mary E; Jackson, Robert B; Carter, David M; Duke, Clifford

Earth Stewardship: A Strategy for Social-Ecological Transformation to Reverse Planetary Degradation Book Chapter

et al., Riccardo Rozzi (Ed.): 2 (1), Springer International Publishing, 2015, ISBN: 978-3-319-12132-1.

Abstract | Links | BibTeX | Tags: Ecological Society of America, Ethics

Power, Mary E; Bouma-Gregson, Keith; Higgins, Patrick; Carlson, Stephanie M

The Thirsty Eel: Summer and Winter Flow Thresholds that Tilt the Eel River of Northwestern California from Salmon-Supporting to Cyanobacterially Degraded States Journal Article

Copeia, 103 (1), pp. 200-211, 2015.

Abstract | Links | BibTeX | Tags: cyanobacteria, Eel river, salmonids

Jr., George Poinar; Walder, Larissa; Uno, Hiromi

Anomalomermis ephemerophagis n. g., n. sp. (Nematoda: Mermithidae) parasitic in the mayfly Ephemerella maculata Traver (Ephermeroptera: Ephermerellidae) in California, USA Journal Article

Systematic Parasitology, 90 (3), pp. 231-236, 2015, ISSN: 0165-5752.

Abstract | Links | BibTeX | Tags: animal morphology, systematics, taxonomy, zoology

2014

Bode, Collin; Limm, Michael; Power, Mary; Finlay, Jacques

Subcanopy Solar Radiation model: Predicting solar radiation across a heavily vegetated landscape using LiDAR and GIS solar radiation models Journal Article

Remote Sensing of Environment, 154 (SI), pp. 387-397, 2014, ISSN: 0034-4257.

Abstract | Links | BibTeX | Tags: insolation, LiDAR, solar model, subcanopy, vegetation shading

Hood, James M; McNeely, Camille; Finlay, Jacques C; Sterner, Robert W

Selective feeding determines patterns of nutrient release by stream invertebrates Journal Article

Freshwater Science, 33 (4), pp. 1093-1107, 2014, ISSN: 2161-9549.

Abstract | Links | BibTeX | Tags: nutrients, selective feeding, stream invertebrates

Kim, Hyojin; Bishop, James K B; Dietrich, William E; Funga, Inez Y

Process dominance shift in solute chemistry as revealed by long-term high-frequency water chemistry observations of groundwater flowing through weathered argillite underlying a steep forested hillslope Journal Article

Geochimica et Cosmochimica Acta, 140 , pp. 1-19, 2014.

Abstract | Links | BibTeX | Tags: bedrock, hydrochemistry, solute flux

Tsui, Martin Tsz-Ki; Blum, Joel D; Finlay, Jacques C; Balogh, Steven J; Nollet, Yabing H; Palen, Wendy J; Power, Mary E

Variation in Terrestrial and Aquatic Sources of Methylmercury in Stream Predators as Revealed by Stable Mercury Isotopes Journal Article

Environmental Science & Technology, 48 (17), pp. 10128–10135, 2014.

Abstract | Links | BibTeX | Tags: Mercury Isotope, Methylmercury

Afkhami, Michelle E; McIntyre, Patrick J; Strauss, Sharon Y

Mutualist-mediated effects on species’ range limits across large geographic scales Journal Article

Ecology Letters, 17 (10), pp. 1265-1273, 2014.

Abstract | Links | BibTeX | Tags: mutualism, species' range

Rempe, Daniella M; Dietrich, William E

A bottom-up control on fresh-bedrock topography under landscapes Journal Article

PNAS, 111 (18), pp. 6576–6581, 2014.

Abstract | Links | BibTeX | Tags: bedrock, topography

Tewksbury, Joshua J; Anderson, John G T; Bakker, Jonathan D; Billo, Timothy J; W. Dunwiddie, Peter; Groom, Martha J; Hampton, Stephanie E; Herman, Steven G; Levey, Douglas J; Machnicki, Noelle J; Rio, Carlos Martínez Del; Power, Mary E; Rowell, Kirsten; Salomon, Anne K; Stacey, Liam; Trombulak, Stephen C; Wheeler, Terry A

Natural History’s Place in Science and Society Journal Article

BioScience, 64 (4), pp. 300-310, 2014.

Abstract | Links | BibTeX | Tags: ecological knowledge, environmental management, food security, human health, sustainability

Link, Percy; Simonin, Kevin; Maness, Holly; Oshun, Jasper; Dawson, Todd; Fung, Inez

Species differences in the seasonality of evergreen tree transpiration in a Mediterranean climate: Analysis of multiyear, half-hourly sap flow observations Journal Article

Water Resources Research, 50 (3), pp. 1869-1894, 2014.

Abstract | Links | BibTeX | Tags: sap flow, seasonality, transpiration

Travis, Joseph; Coleman, Felicia C; Auster, Peter J; Cury, Philippe M; Estes, James A; Orensanz, Jose; Peterson, Charles H; Power, Mary E; Steneck, Robert S; Wootton, Timothy J

Integrating the invisible fabric of nature into fisheries management Journal Article

PNAS, 111 (2), pp. 581-584, 2014.

Abstract | Links | BibTeX | Tags: alternative states, ecosystem flips, fisheries collapse, ocean fisheries

Hill, Kirsten E

Spiders in California’s grassland mosaic: The effects of native and non-native grasses on spiders, their prey, and their interactions PhD Thesis

2014.

Abstract | Links | BibTeX | Tags: grasses, spiders

Munshaw, Robin G; Atlas, W I; Palen, W J; Courcelles, Danielle M; Monteith, Zachary L

Correlates and consequences of injury in a large, predatory stream salamander (Dicamptodon tenebrosus) Journal Article

Amphibia-Reptilia, 35 (1), pp. 107-116, 2014, ISSN: 0173-5373.

Abstract | Links | BibTeX | Tags: aggression, Dicamptodon tenebrosus, population structure, resource competition, territorialism

323 entries « 1 of 7 »