Publications

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2020

Schmidt, Logan; Rempe, Daniella M

Quantifying Dynamic Water Storage in Unsaturated Bedrock with Borehole Nuclear Magnetic Resonance Journal Article

Geophysical Research Letters, 47 (22), pp. e2020GL089600, 2020.

Abstract | Links | BibTeX | Tags: Critical Zone, ERCZO, hydrogeophysics, neutron moderation nuclear magnetic resonance, vadose zone, water storage

Sharrar, A M; Crits-Christoph, A; Méheust, R; Diamond, S; Starr, E P; Banfield, J F

Bacterial secondary metabolite biosynthetic potential in soil varies with phylum, depth, and vegetation type. Journal Article

mBio, 11 , pp. e00416-20, 2020.

Abstract | Links | BibTeX | Tags: ERCZO, metagenomics, secondary metabolism, soil microbiology

Rossi, Gabriel J

Food, Phenology, and Flow—How Prey Phenology and Streamflow Dynamics Affect the Behavior, Ecology, and Recovery of Pacific Salmon PhD Thesis

2020.

BibTeX | Tags: behavior, ERCZO, food webs, mediterranean stream, Oncorhynchus mykiss, phenology

Uno, Hiromi; Pneh, Shelley

Effect of source habitat spatial heterogeneity and species diversity on the temporal stability of aquatic‐to‐terrestrial subsidy by emerging aquatic insects Journal Article

Ecological Research, 35 (3), pp. 474-481, 2020.

Abstract | Links | BibTeX | Tags: diversity, ecological function, ERCZO, predator-prey dynamics, Riparian, STREAM

Wang, Terrance; Kelson, Suzanne J; Greer, George; Thompson, Sally E; Carlson., Stephanie M

Tributary confluences are dynamic thermal refuges for a juvenile salmonid in a warming river network Journal Article

River Research and Applications, 2020.

Abstract | Links | BibTeX | Tags: climate change, Eel river, ERCZO, microhabitat, Oncorhynchus mykiss, stream temperatures, thermal refuges, thermal tolerance

Kelson, Suzanne J; Power, Mary E; Finlay, Jacques C; Carlson, Stephanie M

Partial migration alters population ecology and food chain length: evidence from a salmonid fish Journal Article

Ecosphere, 11 (2), pp. e03044, 2020.

Abstract | Links | BibTeX | Tags: eco-evolutionary dynamics, ERCZO, extended phenotype, food chain length, intraspecific variation, life history, O. mykiss, Oncorhynchus mykiss, partial migration, population ecology, size structure, steelhead/rainbow trout

Al-Shayeb, Basem; Sachdeva, Rohan; Chen, Lin-Xing; Ward, Fred; Munk, Patrick; Devoto, Audra; Castelle, Cindy J; Olm, Matthew R; Bouma-Gregson, Keith; Amano, Yuki; He, Christine; Méheust, Raphaël; Brooks, Brandon; Thomas, Alex; Lavy, Adi; Matheus-Carnevali, Paula; Sun, Christine; Goltsman, Daniela S A; Borton, Mikayla A; Sharrar, Allison; Jaffe, Alexander L; Nelson, Tara C; Kantor, Rose; Keren, Ray; Lane, Katherine R; Farag, Ibrahim F; Lei, Shufei; Finstad, Kari; Amundson, Ronald; Anantharaman, Karthik; Zhou, Jinglie; Probst, Alexander J; Power, Mary E; Tringe, Susannah G; Li, Wen-Jun; Wrighton, Kelly; Harrison, Sue; Morowitz, Michael; Relman, David A; Doudna, Jennifer A; Lehours, Anne-Catherine; Warren, Lesley; Cate, Jamie H D; Santini, Joanne M; Banfield, Jillian F

Clades of huge phages from across Earth’s ecosystems Journal Article

Nature, 578 , pp. 425-431, 2020.

Abstract | Links | BibTeX | Tags: bacteriophage, ERCZO, metagenomes, metagenomic sequencing

Kelson, Suzanne J; Miller, Michael R; Thompson, Tasha Q; O'Rourke, Sean M; Carlson, Stephanie M

Temporal dynamics of migration‐linked genetic variation are driven by streamflows and riverscape permeability Journal Article

Molecular Ecology, 29 (5), pp. 870-885, 2020.

Abstract | Links | BibTeX | Tags: ecology, ERCZO, genetic variation, landscape genetics, life history, O. mykiss, Oncorhynchus mykiss, partial barrier, partial migration, river networks

Dawson, T E; Hahm, W J; Crutchfield-Peters, K

Digging deeper: what the critical zone perspective adds to the study of plant ecophysiology Journal Article

New Phytologist, 226 (3), pp. 666-671, 2020.

Abstract | Links | BibTeX | Tags: Critical Zone, ERCZO, nutrients, plant ecophysiology, soil, water, weathered bedrock

2019

Diamond, Spencer; Andeer, Peter F; Li, Zhou; Crits-Christoph, Alexander; Burstein, David; Anantharaman, Karthik; Lane, Katherine R; Thomas, Brian C; Pan, Chongle; Northen, Trent R; Banfield, Jillian F

Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Journal Article

Nature Microbiology, 4 , pp. 1356-1367, 2019.

Abstract | Links | BibTeX | Tags: ERCZO, metagenomics, soil microbes

Kelson, Suzanne J; Carlson, Stephanie M

Do precipitation extremes drive growth and migration timing of a Pacific salmonid fish in Mediterranean‐climate streams? Journal Article

Ecosphere, 10 (3), pp. e02618, 2019.

Abstract | Links | BibTeX | Tags: Drought, ERCZO, growth, headwaters, migration, Oncorhynchus mykiss, salmonids, stream flows

Bouma-Gregson, Keith; Olm, Matthew R; Probst, Alexander J; Anantharaman, Karthik; Power, Mary E; Banfield, Jillian F

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network Journal Article

The ISME Journal, 13 , pp. 1618–1634, 2019.

Abstract | Links | BibTeX | Tags: algae, cyanobacteria, ERCZO

Kelson, Suzanne J; Miller, Michael R; Thompson, Tasha Q; O'Rourke, Sean M; Carlson, Stephanie M

Do genomics and sex predict migration in a partially migratory salmonid fish, Oncorhynchus mykiss? Journal Article

Canadian Journal of Fisheries and Aquatic Sciences, 76 (11), pp. 2080-2088, 2019.

Abstract | Links | BibTeX | Tags: ERCZO, genetic variation, O. mykiss, partial migration

2018

Bouma-Gregson, Keith; Kudela, Raphael M; Power, Mary

Widespread anatoxin-a detection in benthic cyanobacterial mats throughout a river network Journal Article

PLoS One, 13 (5), 2018.

Abstract | Links | BibTeX | Tags: algae, biodiversity, ERCZO

Rempe, Daniella; Dietrich, William

Direct observations of rock moisture, a hidden component of the hydrologic cycle Journal Article

Proceedings of the National Academy of Science of the United States of America, 115 (11), pp. 2664-2669, 2018.

Abstract | Links | BibTeX | Tags: Critical Zone, deep vadose zone, ERCZO, evapotranspiration, rock moisture, water budget

2017

Bouma-Gregson, Keith

The Ecology of Benthic Toxigenic Anabaena and Phormidium (Cyanobacteria) in the Eel River, California PhD Thesis

University of California, Berkeley, 2017, ISBN: 978-0-355-94920-9.

Abstract | BibTeX | Tags: Anabaena, Anatoxin-a, Biological sciences, cyanobacteria, Cyanotoxin, ERCZO, metagenomics, Phormidium

Bouma-Gregson, Keith; Power, Mary; Bormans, Myriam

Rise and fall of toxic benthic freshwater cyanobacteria (Anabaena spp.) in the Eel river: Buoyancy and dispersal Journal Article

Harmful Algae, 66 (1), pp. 79-87, 2017.

Abstract | Links | BibTeX | Tags: Benthic cyanobacteria Anabaena Buoyancy Harmful algal bloom Anatoxin-a Dispersal, ERCZO

Grant, Gordon E; Dietrich, William E

The frontier beneath our feet Journal Article

Water Resources Research, 53 (4), pp. 2605-2609, 2017.

Abstract | Links | BibTeX | Tags: Critical Zone, environmental problems, ERCZO, field studies, groundwater, landscape development, water

Schaaf, Cody J; Kelson, Suzanne J; Nusslé, Sébastien C; Carlson, Stephanie M

Black spot infection in juvenile steelhead trout increases with stream temperature in northern California Journal Article

Environmental Biology of Fishes, 100 (6), pp. 733-744, 2017.

Abstract | Links | BibTeX | Tags: black spot disease, ecology, ERCZO, parasitism, steelhead trout, water temperature

Kim, Hyojin; Dietrich, William E; Thurnhoffer, Benjamin M; Bishop, Jim K B; Fung, Inez Y

Controls on solute concentration‐discharge relationships revealed by simultaneous hydrochemistry observations of hillslope runoff and stream flow: The importance of critical zone structure Journal Article

Water Resources Research, 53 (2), pp. 1424-1443, 2017.

Abstract | Links | BibTeX | Tags: concentration-discharge relationships, critical zone structure, ERCZO, simultaneous observations of ground water and stream water

2016

Uno, Hiromi

Spatial and temporal linkage of stream-riparian food webs by seasonal migration of mayfly Ephemerella maculata PhD Thesis

University of California, Berkeley, 2016, ISBN: 978-1-369-05549-8.

Abstract | BibTeX | Tags: Aquatic insect, Aquatic-terrestrial linkage, Biological sciences, ERCZO, food web, Spatial heterogeneity, subsidy, Temporal heterogeneity